miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|26567192|gb|CA839427.1|CA839427 GCCACACCCCTCTCTCTCTCCATTTCTCTCTCTCTCTCTCCTCTCTATCCCTCTCTCATATAAGACCTTCGATCCTTCAA
ATTCTTCACCTCATTTCGTATAAAAACACTATCATTTTCAAATTCTTGGCGCTTTGATCTCTCATTTGAACACTATAAAG
CTCTGAAAACCCCCTATTTTCCCCCAAATCAGCTGACCCAGAAAAGAGAAAACCCTAGATTTGGGTTTGGTAGGATTAGG
GTGATTTCAAGAAGAGGGGGAGGGAGGTGATCCCAGATATATAGATAGAGAAAAATGGCGGAACAAGGCTTGGAAGGAAG
CCAGCCAGTGGATCCCATTAAGCACCCATCTGGGATCGTCCCGACGCTGCAGAATATTGTCTCAACTGTAAACTTGGACT
GCAAATTGGATCTGAAAGCCATTGCACTGCAAGCTCGTAACGCAGAATATAACCCAAAGCGTTTTGCTGCCGTTATTATG
AGGATAAGGGAGCCAAAGACCACTGCTTTAATATTTGCTTCCGGCAAAATGGTTTGTACGGGAGCTAAGAGTGAGCAACA
ATCAAAACTTGCAGCTCGTAAGTATGCTCGAATTATTCAGAAGCTGNGATTTCCTGNCAAATTTAAGGATTTCAAAATCC
AGAACATAGTGGGATCTTGCGATGTCAAATTTC




Most similar to sp|P48511|TBP_MESCR

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P48511|TBP_MESCR TATA-box-binding protein OS=Mesembryanthemum
           crystallinum PE=2 SV=1
          Length = 200

 Score =  220 bits (560), Expect = 8e-57
 Identities = 114/126 (90%), Positives = 114/126 (90%)
 Frame = +1

Query: 295 MAEQGLEGSQPVDPIKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAV 474
           MAEQGLEGSQPVDPIKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAV
Sbjct: 1   MAEQGLEGSQPVDPIKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAV 60

Query: 475 IMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQXXXXXXXXXXXXIQNIVG 654
           IMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQ            IQNIVG
Sbjct: 61  IMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVG 120

Query: 655 SCDVKF 672
           SCDVKF
Sbjct: 121 SCDVKF 126